PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G355700.3
Common NameB456_009G355700, LOC105766250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 143aa    MW: 15791.9 Da    PI: 10.8085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G355700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-2077125255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrd    g+r r +lg+f+taeeAa a+++a+ kl+g
  Gorai.009G355700.3  77 RYRGVRQRP-WGRWAAEIRD----GRRMRLWLGTFDTAEEAAVAYDQAAVKLRG 125
                         8********.**********....336*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.5E-383141IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000187.96E-2976132No hitNo description
Gene3DG3DSA:3.30.730.103.0E-3077133IPR001471AP2/ERF domain
PfamPF008473.1E-1477125IPR001471AP2/ERF domain
SMARTSM003801.7E-3477139IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2177133IPR016177DNA-binding domain
PROSITE profilePS5103223.45977133IPR001471AP2/ERF domain
PRINTSPR003671.3E-117889IPR001471AP2/ERF domain
PRINTSPR003671.3E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSPPQPNGKP QQPISRRIVR ITVTDADATD SSSDEEAAPP KKIQKRPKKK LVNEITIGVS  60
TKENDVIAGS SHSKVKRYRG VRQRPWGRWA AEIRDGRRMR LWLGTFDTAE EAAVAYDQAA  120
VKLRGPNAPT NFKLLDCNAV QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2073134164ATERF1
3gcc_A2e-2073134164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945PKKIQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441081.11e-101PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ9C9951e-36ERF70_ARATH; Ethylene-responsive transcription factor ERF070
SwissprotQ9SUE36e-35CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0D2U0D61e-101A0A0D2U0D6_G
STRINGGLYMA11G02140.15e-37(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.19e-19ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]